Folks:
Don’t.
Adding prick-punched “nail marks” to clapboard structures has to be one of the leading things the skillful craftsmen in our hobby do that they really shouldn’t.
Here’s why: the whole point of clapboards, shingles, novelty siding and the like is to cover its own joints, and to cover its own nails. All are nailed near the top edge, and the next piece up is laid to overlap the nails. I haven’t seen too many board-and-batten structures, but I don’t recall seeing any visible nails on these, either, so they’re probably placed where the battens will cover them.
The reason: nails are unsightly, and they also rust. Rust absorbs water into the space between nail and wood, rotting the wood and causing further rust.
Occasionally a clapboard that has warped, or one that somebody has removed, will be face-nailed, but in nearly every case, with nearly every type of siding, it’s more realistic to leave them out. The only kind of siding which would be visibly face-nailed is plain wooden planking, which is not very common except for floors and modern decks, and even here the nails will be practically invisible, since they’ve been driven flush and probably painted over.
Scribe the board ends, add grain, and detail to your heart’s content, but leave those nail holes out.